.. DuIvyProcedures_Docs documentation master file, created by
   sphinx-quickstart on Thu Feb 01 21:42:12 2024.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Welcome to DuIvyProcedures's documentation!
===========================================

.. toctree::
   :maxdepth: 1

   DuIvyProcedures.md
   Install.md
   Framework.md
   gmx_Cluster.md
   gmx_DCCM.md
   gmx_Density.md
   gmx_dPCA.md
   gmx_DSSP.md
   gmx_FEL.md
   gmx_Gyrate.md
   gmx_Hbond.md
   gmx_Mdmat.md
   gmx_PCA.md
   gmx_RMSD.md
   gmx_RMSF.md
   gmx_SASA.md
   DCCM.md
   Density.md
   DensityMap.md
   Gyrate.md
   FEL.md
   Hbond.md
   Hydrophobic.md
   MSM.md
   PCA.md
   PiCation.md
   PiStacking.md
   RDCM.md
   RDF.md
   RMSD.md
   RMSF.md
   SaltBridge.md
   SPM.md
   tICA.md
   tSNE.md
   UMAP.md
   User_Mod.md
   Develop.md



.. Indices and tables
.. ==================

.. * :ref:`genindex`
.. * :ref:`modindex`
.. * :ref:`search`